From 14503a68d4fc3ed26857a8f7920668f1c2f4852c Mon Sep 17 00:00:00 2001
From: Eyck Jentzsch <eyck@minres.com>
Date: Mon, 9 Apr 2018 10:07:11 +0200
Subject: [PATCH] Added setup for Mendel project

---
 README.md                      |   9 +-
 com.minres.projects.setup      |   1 +
 projects/JIT-ISS-CoreDsl.setup | 109 ++---------------
 projects/Mendel.setup          | 210 +++++++++++++++++++++++++++++++++
 4 files changed, 224 insertions(+), 105 deletions(-)
 create mode 100644 projects/Mendel.setup

diff --git a/README.md b/README.md
index 8fa94b4..f1e1c0a 100644
--- a/README.md
+++ b/README.md
@@ -7,19 +7,18 @@ The repo contains OOMPH setup files for MINRES projects and tools to ease jump s
 Download the Eclipse Installer from [here](https://www.eclipse.org/downloads/eclipse-packages/?show_instructions=TRUE) and install it
 according to the instructions given there.
 
-## Use the MINRES setups permanently with the eclipse installler
+## Use the MINRES setups permanently with the eclipse installer
 
-Open the eclipse_inst.ini file being part of the Eclipse Intaller. Add the following line at the end:
+Open the eclipse_inst.ini file being part of the Eclipse Installer (on MacOS it is located at 'Eclipse Installer.app/Contents/Eclipse'). Add the following line at the end:
 
-``` 
+```
 -Doomph.redirection.setups=index:/->https://raw.githubusercontent.com/Minres/oomph-setups/master/
 ```
 
-## Use the MINRES setups temporarily with the eclipse installler
+## Use the MINRES setups temporarily with the eclipse installer
 
 Run the eclipse installer with additional command line arguments:
 
 ```
 eclipse-inst -vmargs '-Doomph.redirection.setups=index:/->https://raw.githubusercontent.com/Minres/oomph-setups/master/'
 ```
-
diff --git a/com.minres.projects.setup b/com.minres.projects.setup
index 14f1a01..886af10 100644
--- a/com.minres.projects.setup
+++ b/com.minres.projects.setup
@@ -46,5 +46,6 @@
   <project href="projects/SCViewer.setup?name='SCViewer'#/"/>
   <project href="projects/SystemC-Quickstart.setup?name='systemc.quickstart'#/"/>
   <project href="projects/JIT-ISS-CoreDsl.setup?name='JIT.ISS.CoreDsl'#/"/>
+  <project href="projects/Mendel.setup?name='mendel'#/"/>
   <description>MINRES provided cool projects.</description>
 </setup:ProjectCatalog>
diff --git a/projects/JIT-ISS-CoreDsl.setup b/projects/JIT-ISS-CoreDsl.setup
index 5ebd7a0..5b82dd6 100644
--- a/projects/JIT-ISS-CoreDsl.setup
+++ b/projects/JIT-ISS-CoreDsl.setup
@@ -26,89 +26,13 @@
     </setupTask>
     <setupTask
         xsi:type="setup:VariableTask"
-        name="minres.git.author.name"
-        label="Github author name">
-      <description>The author name used for Github commits</description>
-    </setupTask>
-    <setupTask
-        xsi:type="setup:VariableTask"
-        name="minres.git.author.email"
-        label="Github author email">
-      <description>The email address associated with Github commits</description>
-    </setupTask>
-    <setupTask
-        xsi:type="setup:VariableTask"
-        type="PASSWORD"
-        name="minres.git.user.password"
-        label="Github password for issues">
-      <annotation
-          source="http://www.eclipse.org/oomph/setup/PasswordVerificationDisabled">
-        <detail
-            key="type">
-          <value>form</value>
-        </detail>
-        <detail
-            key="form.url">
-          <value>https://github.com/session</value>
-        </detail>
-        <detail
-            key="form.cookie">
-          <value>PHPSESSID</value>
-        </detail>
-        <detail
-            key="form.parameters">
-          <value>login password authenticity_token utf8 commit</value>
-        </detail>
-        <detail
-            key="form.secure.parameters">
-          <value>password</value>
-        </detail>
-        <detail
-            key="form.filter">
-          <value>login=anonymous\&amp;.*</value>
-        </detail>
-        <detail
-            key="form.parameter.login">
-          <value>$${github.user.id}</value>
-        </detail>
-        <detail
-            key="form.parameter.password">
-          <value>$${value}</value>
-        </detail>
-        <detail
-            key="form.parameter.utf8">
-          <value>✓</value>
-        </detail>
-        <detail
-            key="form.parameter.commit">
-          <value>Sign in</value>
-        </detail>
-        <detail
-            key="form.ok">
-          <value>Valid password for $${form.parameter.login} at $${form.url}.</value>
-        </detail>
-        <detail
-            key="form.info">
-          <value>Validate the password for $${form.parameter.login} at $${form.url}.</value>
-        </detail>
-        <detail
-            key="form.warning">
-          <value>Unable to validate the password for $${form.parameter.login} because $${form.url} is unreachable.</value>
-        </detail>
-        <detail
-            key="form.error">
-          <value>Invalid password for $${form.parameter.login} at $${form.url}.</value>
-        </detail>
-      </annotation>
-    </setupTask>
-    <setupTask
-        xsi:type="setup:VariableTask"
-        name="minres.git.remoteURIs"
-        label="MINRES Git repository">
+        name="minres-git-stream"
+        label="Stream to checkout">
       <choice
-          value="https://minres.com/git/@{remoteURI}.git"
-          label="HTTPS"/>
-      <description>Choose from the available Git URIs</description>
+          value="develop"/>
+      <choice
+          value="master"/>
+      <description>Stream to checkout</description>
     </setupTask>
   </setupTask>
   <setupTask
@@ -151,22 +75,7 @@
       xsi:type="git:GitCloneTask"
       id="git.clone.JIT.ISS.CoreDsl"
       filter=""
-      remoteURI="SystemC/JIT-ISS-CoreDsl">
-    <annotation
-        source="http://www.eclipse.org/oomph/setup/InducedChoices">
-      <detail
-          key="inherit">
-        <value>minres.git.remoteURIs</value>
-      </detail>
-      <detail
-          key="label">
-        <value>${scope.project.label} Git repository</value>
-      </detail>
-      <detail
-          key="target">
-        <value>remoteURI</value>
-      </detail>
-    </annotation>
+      remoteURI="https://${minres.git.user.id}@minres.com/git/SystemC/JIT-ISS-CoreDsl.git">
     <description>${scope.project.label}</description>
   </setupTask>
   <setupTask
@@ -193,8 +102,8 @@
       name="com.minres.coredsl.target">
     <description>Sets the CoreDSL target platform</description>
   </setupTask>
-  <stream name="master"
-      label="Master">
+  <stream name="${minres-git-stream}"
+      label="Stream to checkout">
     <setupTask
         xsi:type="setup:EclipseIniTask"
         option="-Doomph.redirection.JIT.ISS.CoreDsl"
diff --git a/projects/Mendel.setup b/projects/Mendel.setup
new file mode 100644
index 0000000..e39d2d4
--- /dev/null
+++ b/projects/Mendel.setup
@@ -0,0 +1,210 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<setup:Project
+    xmi:version="2.0"
+    xmlns:xmi="http://www.omg.org/XMI"
+    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+    xmlns:git="http://www.eclipse.org/oomph/setup/git/1.0"
+    xmlns:jdt="http://www.eclipse.org/oomph/setup/jdt/1.0"
+    xmlns:pde="http://www.eclipse.org/oomph/setup/pde/1.0"
+    xmlns:predicates="http://www.eclipse.org/oomph/predicates/1.0"
+    xmlns:projects="http://www.eclipse.org/oomph/setup/projects/1.0"
+    xmlns:setup="http://www.eclipse.org/oomph/setup/1.0"
+    xmlns:setup.p2="http://www.eclipse.org/oomph/setup/p2/1.0"
+    xmlns:setup.workingsets="http://www.eclipse.org/oomph/setup/workingsets/1.0"
+    xsi:schemaLocation="http://www.eclipse.org/oomph/setup/git/1.0 http://git.eclipse.org/c/oomph/org.eclipse.oomph.git/plain/setups/models/Git.ecore http://www.eclipse.org/oomph/setup/jdt/1.0 http://git.eclipse.org/c/oomph/org.eclipse.oomph.git/plain/setups/models/JDT.ecore http://www.eclipse.org/oomph/setup/pde/1.0 http://git.eclipse.org/c/oomph/org.eclipse.oomph.git/plain/setups/models/PDE.ecore http://www.eclipse.org/oomph/predicates/1.0 http://git.eclipse.org/c/oomph/org.eclipse.oomph.git/plain/setups/models/Predicates.ecore http://www.eclipse.org/oomph/setup/projects/1.0 http://git.eclipse.org/c/oomph/org.eclipse.oomph.git/plain/setups/models/Projects.ecore http://www.eclipse.org/oomph/setup/workingsets/1.0 http://git.eclipse.org/c/oomph/org.eclipse.oomph.git/plain/setups/models/SetupWorkingSets.ecore"
+    name="mendel"
+    label="Mendel (non-public)">
+  <setupTask
+      xsi:type="setup:CompoundTask"
+      name="Global Variables">
+    <setupTask
+        xsi:type="setup:VariableTask"
+        name="minres.git.user.id"
+        defaultValue=""
+        label="User ID">
+      <description>The user ID of the MINRES account</description>
+    </setupTask>
+    <setupTask
+        xsi:type="setup:VariableTask"
+        name="minres-git-stream"
+        label="Stream to checkout">
+      <choice
+          value="develop"/>
+      <choice
+          value="master"/>
+      <description>Stream to checkout</description>
+    </setupTask>
+  </setupTask>
+  <setupTask
+      xsi:type="jdt:JRETask"
+      version="JavaSE-1.8"
+      location="${jre.location-1.8}">
+    <description>Define the JRE needed to compile and run the Java projects of ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup:EclipseIniTask"
+      option="-Xmx"
+      value="2G"
+      vm="true">
+    <description>Set the heap space needed to work with the projects of ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup:ResourceCreationTask"
+      excludedTriggers="STARTUP MANUAL"
+      content="&lt;?xml version=&quot;1.0&quot; encoding=&quot;UTF-8&quot;?>&#xD;&#xA;&lt;section name=&quot;Workbench&quot;>&#xD;&#xA;&#x9;&lt;section name=&quot;org.eclipse.jdt.internal.ui.packageview.PackageExplorerPart&quot;>&#xD;&#xA;&#x9;&#x9;&lt;item value=&quot;true&quot; key=&quot;group_libraries&quot;/>&#xD;&#xA;&#x9;&#x9;&lt;item value=&quot;false&quot; key=&quot;linkWithEditor&quot;/>&#xD;&#xA;&#x9;&#x9;&lt;item value=&quot;2&quot; key=&quot;layout&quot;/>&#xD;&#xA;&#x9;&#x9;&lt;item value=&quot;2&quot; key=&quot;rootMode&quot;/>&#xD;&#xA;&#x9;&#x9;&lt;item value=&quot;&amp;lt;?xml version=&amp;quot;1.0&amp;quot; encoding=&amp;quot;UTF-8&amp;quot;?&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;packageExplorer configured=&amp;quot;true&amp;quot; group_libraries=&amp;quot;1&amp;quot; layout=&amp;quot;2&amp;quot; linkWithEditor=&amp;quot;0&amp;quot; rootMode=&amp;quot;2&amp;quot; sortWorkingSets=&amp;quot;false&amp;quot; workingSetName=&amp;quot;&amp;quot;&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;localWorkingSetManager&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;workingSet editPageId=&amp;quot;org.eclipse.jdt.internal.ui.OthersWorkingSet&amp;quot; factoryID=&amp;quot;org.eclipse.ui.internal.WorkingSetFactory&amp;quot; id=&amp;quot;1382792884467_1&amp;quot; label=&amp;quot;Other Projects&amp;quot; name=&amp;quot;Other Projects&amp;quot;/&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;/localWorkingSetManager&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;activeWorkingSet workingSetName=&amp;quot;Other Projects&amp;quot;/&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;allWorkingSets workingSetName=&amp;quot;Other Projects&amp;quot;/&amp;gt;&amp;#x0D;&amp;#x0A;&amp;lt;/packageExplorer&amp;gt;&quot; key=&quot;memento&quot;/>&#xD;&#xA;&#x9;&lt;/section>&#xD;&#xA;&lt;/section>&#xD;&#xA;"
+      targetURL="${workspace.location|uri}/.metadata/.plugins/org.eclipse.jdt.ui/dialog_settings.xml"
+      encoding="UTF-8">
+    <description>Initialize JDT's package explorer to show working sets as its root objects</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup:VariableTask"
+      name="eclipse.target.platform"
+      value="None"
+      defaultValue="Neon"
+      storageURI="scope://Workspace"/>
+  <setupTask
+      xsi:type="setup.p2:P2Task">
+    <requirement
+        name="org.eclipse.xtext.sdk.feature.group"
+        versionRange="[2.13.0,2.99.0]"/>
+    <requirement
+        name="org.eclipse.gmf.runtime.notation.sdk.feature.group"/>
+    <requirement
+        name="org.eclipse.gmf.feature.group"/>
+    <requirement
+        name="org.eclipse.gmf.runtime.sdk.feature.group"/>
+    <repository
+        url="http://download.eclipse.org/modeling/tmf/xtext/updates/composite/releases/"/>
+    <description>Install the tools needed in the IDE to work with the source code for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="git:GitCloneTask"
+      id="git.clone.mendel"
+      filter=""
+      remoteURI="https://${minres.git.user.id}@minres.com/git/Mendel/mendel.git">
+    <description>${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="projects:ProjectsImportTask">
+    <sourceLocator
+        rootFolder="${git.clone.mendel.location}"/>
+  </setupTask>
+  <setupTask
+      xsi:type="pde:TargetPlatformTask"
+      name="Luna Platform">
+    <description>Sets the Mendel target platform</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} Features">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/features/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} SBML Editor"
+        id="">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:OrPredicate">
+          <operand
+              xsi:type="predicates:NamePredicate"
+              pattern="com.minres.sbml_editor.product"/>
+          <operand
+              xsi:type="predicates:NamePredicate"
+              pattern="com\.minres\.mendel\.models\.sbml"/>
+        </operand>
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} Tests">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/tests/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} Releng">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/releng/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} 3rd Party">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/3rdparty/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} Plugins">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/bundles/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <setupTask
+      xsi:type="setup.workingsets:WorkingSetTask">
+    <workingSet
+        name="${scope.project.name} C++">
+      <predicate
+          xsi:type="predicates:AndPredicate">
+        <operand
+            xsi:type="predicates:LocationPredicate"
+            pattern="${git.clone.mendel.location}/C\+\+/.*"/>
+      </predicate>
+    </workingSet>
+    <description>The dynamic working sets for ${scope.project.label}</description>
+  </setupTask>
+  <stream name="${minres-git-stream}"
+      label="Stream">
+    <setupTask
+        xsi:type="setup:EclipseIniTask"
+        option="-Doomph.redirection.mendel"
+        value="=https://git.eclipse.org/c/Minres/oomph-setups.git.git/plain//Mendel.setup->${git.clone.mendel.location|uri}//mendel.setup"
+        vm="true">
+      <description>Set an Oomph redirection system property to redirect the logical location of this setup to its physical location in the Git clone.</description>
+    </setupTask>
+    <description></description>
+  </stream>
+  <description>A Xtext based CoreDSL editor with syntax highlighting and context sensitive help.</description>
+</setup:Project>